PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0055s0270.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 392aa    MW: 44540.7 Da    PI: 4.4043
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0055s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.5e-35121042103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Flkk ye+++de+++++isws++++sfv+ d++ef+ ++LpkyFkhsn +SFvRQLn+YgF+k+++++         weF+++ F +
  SapurV1A.0055s0270.1.p  12 FLKKCYEMVDDESTNSIISWSQTNDSFVIRDMTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDQ---------WEFANDGFIR 89 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g+k+ll++i r+k++
  SapurV1A.0055s0270.1.p  90 GQKHLLKNICRRKNS 104
                             ************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.11E-338101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-538101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.3E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVKSSESGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI RDMTEFSVHL LPKYFKHSNS  60
SSFVRQLNIY GFRKIDTDQW EFANDGFIRG QKHLLKNICR RKNSQVTDNR KSVQQQDNSI  120
DHCESVENAG LWKEVESLKT GKSALAQELV KLGQHQETAD NKLLLLRDRL QGMEKNQQQM  180
LSFLVMVVQN PGFLAQLLHK KENNWRMAEP GSIVEQGADD VYLLASEGMI VRYQPPVDEM  240
FEPVHAPPIG PENPLESNPS SDGMKDFFVN PDFMELLMDE NLGSENHASF VLPELADDGS  300
WEHMFLANPF IENTKDTKPE SEESPDTETD TGTTVAGTQL ERSQNFEYLI EQMEKSSDLE  360
NKAADGPYFD KSQNLEILTW QMDLLASEPN H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-23410412123Heat shock factor protein 1
5d5v_D5e-23410121129Heat shock factor protein 1
5d5v_B5e-23410121129Heat shock factor protein 1
5d5u_B5e-23410121129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1474130.0EF147413.1 Populus trichocarpa clone WS01230_L11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315847.10.0Heat shock factor protein 5
TrEMBLA9PGC30.0A9PGC3_POPTR; Heat shock factor protein 5
STRINGPOPTR_0010s11490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-108heat shock transcription factor A8